ABOUT THIS RECORDspecies: Hordeum vulgare
miRNA family: MIR396
source: PMRD, original name: hvu-miR396
Taxonomy by NCBI:
Hordeum vulgare Hordeum Triticeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCCACAGGCTTTCTTGAACTG miRNA* GTTCAAGAAAGTCCTTGGAAA mismatches: 2 bulges: 0 |
pre-miRNA
GCGGCCATGCTCTCCACAGGCTTTCTTGAACTGTCAACTCGCGCGCGCCAGCCATCCATGGCCTGCTGCGTTGATGGTTCAAGAAAGTCCTTGGAAAACA
TGCCCGC
dot-bracket secondary structure
((((.((((...((((..((((((((((((((((((((.((.(((.((((........)))).))))).))))))))))))))))))))..))))...))
)).))))
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
degradome data
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GCGGCCATGCTCTCCACAGGCTTTCTTGAACTGTCAACTCGCGCGCGCCAGCCATCCATGGCCTGCTGCGTTGATGGTTCAAGAAAGTCCTTGGAAAACA
TGCCCGC
dot-bracket secondary structure
((((.((((...((((..((((((((((((((((((((.((.(((.((((........)))).))))).))))))))))))))))))))..))))...))
)).))))
SIMILARITIES| miRBase far-MIR396: 6e-18 PMRD far-miR396: 6e-18 microPC miR396: 0.000000000000006 | UniProt no hits RFAM MIR396: 0.000000000006 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
degradome data
download this record
