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ABOUT THIS RECORD
ID:
MNEST048656
species:
Hordeum vulgare subsp. Vulgare
miRNA family:
MIR159
source:
PMRD, original name:
hvv-miR159a
SEQUENCE & STRUCTURE
miRNA
TTTGGATTGAAGGGAGCTCTG
miRNA*
GATTTTTCTCCTCCACGGTCCAGATCTGGGTGCAAGCTCTTTCTTGCGTTTAGATCTCTCCTTG
mismatches:
5
bulges:
198
View larger
pre-miRNA
TTTGGATTGAAGGGAGCTCTG
CATCTTGATCTATTACTAATTAGTTTCCTCTTCCTTCTGCTGCATGCAAGCCTGGAAATGTTTTGCA
GATTTTTCTCCT
CCACGGTCCAGATCTGGGTGCAAGCTCTTTCTTGCGTTTAGATCTCTCCTTG
AGCTTGAACTTTTCAAGCTGTGATTTTATGACCACGGTGTTTTGTTTT
CCCCTCAAGGTAATGAATGAAAGATTCAGGTTATGCTTTGTACTTTGCATGGACCTTTATTCCCTTGCCTTTGAGCTGTGGTGTCATTGTTCCTTCGTCT
TTA
dot-bracket secondary structure
...((((.(((((((..((((
((....((.(((........)))..))...((((....(((.......)))..))))......))))
))..........
.(((((...(((((((..((((((......))))))..)))))))..))...
(((((((.....))))))))))........(((((((...........
...((((((((((.((((((.......(((((((((..........)))).)))))))))))..))))).)))))))))))).......)))))))))))
...
SIMILARITIES
miRBase
hvu-MIR159b
:
2e-39
PMRD
osa-miR159b
:
0.0000000003
microPC
miR159
:
0.001
UniProt
no hits
RFAM
MIR159: 0.000000005
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction:
not a miRNA
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