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ABOUT THIS RECORD
ID:
MNEST048664
species:
Hordeum vulgare subsp. Vulgare
miRNA family:
MIR172
source:
PMRD, original name:
hvv-miR172a
SEQUENCE & STRUCTURE
miRNA
AGAATCCTGATGATGCTGCAG
miRNA*
GGAGCCATCGGGTCGAACC
mismatches:
7
bulges:
2
View larger
pre-miRNA
ATACAGTCATGAATCCAATCCACTACATGAAACCGCCCCGGCGCAAGTCCGAAAACGCTGAAACGCCGGAGGAGCAAAAAAGATACTGGCTTCCCAGAAC
ATTTACAGTATGGCTTCTTTTTCAGCGGGGGTGGTGGTGGTGGTGTTGGTTGCTTGACGACGATGAT
GGAGCCATCGGGTCGAACC
GGAATGAGGCCGAT
GGGGCGGCGGGGGCAGCTGCCGCGGCTGTTTTGG
AGAATCCTGATGATGCTGCAG
dot-bracket secondary structure
.....((((.(...((((((((((((.....(((((((((((....)))......((((((((.....(((((((..........((((....))))..(
((.......)))))))))))))))))))))))))).))))))).)))))...).))))........(
(.((((((((((.....((
(((((..(((((..
..((((((.......)))))).))))))))))))
.....)))))))..))).)).
SIMILARITIES
miRBase
bdi-MIR172d
:
4e-24
PMRD
hvv-miR172d
:
1e-141
microPC
miR172
:
0.0002
UniProt
no hits
RFAM
mir-172: 0.001
Identical with:
hvv-miR172b
from PMRD (
MNEST048665
)
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction:
not a miRNA
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