ABOUT THIS RECORDspecies: Lotus japonicus
miRNA family: MIR157
source: PMRD, original name: lja-miR157a
Taxonomy by NCBI:
Lotus japonicus Lotus Loteae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTGACAGAAGATAGAGAGCAC miRNA* GCCGTCTGAAGA mismatches: 14 bulges: 0 |
pre-miRNA
TTGACAGAAGATAGAGAGCACAACCTGAGTCGAAAGATCCAGGTTTGCCGTCTGAAGA
dot-bracket secondary structure
...........((((..(((.((((((..((....))..)))))))))..))))....
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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TTGACAGAAGATAGAGAGCACAACCTGAGTCGAAAGATCCAGGTTTGCCGTCTGAAGA
dot-bracket secondary structure
...........((((..(((.((((((..((....))..)))))))))..))))....
SIMILARITIES| miRBase gma-MIR156c: 0.00000000001 PMRD gma-miR156c: 0.00000000001 microPC miR157: 0.00001 | UniProt no hits RFAM mir-156: 0.0007 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
download this record
