ABOUT THIS RECORDspecies: Lotus japonicus
miRNA family: MIR167
source: PMRD, original name: lja-miR167
Taxonomy by NCBI:
Lotus japonicus Lotus Loteae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGAAGCTGCCAGCATGATCTG miRNA* GATCATATGGCAGCTTCACC mismatches: 1 bulges: 1 |
pre-miRNA
GTTCGTGCACCTGCAATAGTTGAAGCTGCCAGCATGATCTGAGCTTACCTTCTTGTAATAATGGTAAGAACAGATCATATGGCAGCTTCACCTGTTGAAT
GGAAGCAT
dot-bracket secondary structure
....((((.((..((((((.(((((((((((..((((((((..((((((.............))))))..)))))))).))))))))))).))))))...
))..))))
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Wang Y, Li P, Cao X, Wang X, Zhang A, Li X, Biochem Biophys Res Commun. 378:799-803(2009)., "Identification and expression analysis of miRNAs from nitrogen-fixing soybean nodules"
GTTCGTGCACCTGCAATAGTTGAAGCTGCCAGCATGATCTGAGCTTACCTTCTTGTAATAATGGTAAGAACAGATCATATGGCAGCTTCACCTGTTGAAT
GGAAGCAT
dot-bracket secondary structure
....((((.((..((((((.(((((((((((..((((((((..((((((.............))))))..)))))))).))))))))))).))))))...
))..))))
SIMILARITIES| miRBase lja-MIR167: 1e-56 PMRD gma-miR167n: 0.00000000009 microPC miR167: 5e-34 | UniProt no hits RFAM MIR167_1: 0.00000002 |
Identical with: miR167 from microPC (MNEST046166) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Wang Y, Li P, Cao X, Wang X, Zhang A, Li X, Biochem Biophys Res Commun. 378:799-803(2009)., "Identification and expression analysis of miRNAs from nitrogen-fixing soybean nodules"
