ABOUT THIS RECORDspecies: Lotus japonicus
source: PMRD, original name: lja-miR171
Taxonomy by NCBI:
Lotus japonicus Lotus Loteae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGATTGATCCACGCCAATATC miRNA* GATCTACGATGATAGAATCT mismatches: 10 bulges: 1 |
pre-miRNA
TGATTGATCCACGCCAATATCACCTGCGCCGGTTGGTGTCGAAGCGATCGCCGGTGCGGATGAGATCTACGATGATAGAATCT
dot-bracket secondary structure
.((((.(((..((......(((.((((((((((...(((....)))...)))))))))).)))......))..)))..)))).
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
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TGATTGATCCACGCCAATATCACCTGCGCCGGTTGGTGTCGAAGCGATCGCCGGTGCGGATGAGATCTACGATGATAGAATCT
dot-bracket secondary structure
.((((.(((..((......(((.((((((((((...(((....)))...)))))))))).)))......))..)))..)))).
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
download this record
