ABOUT THIS RECORDspecies: Lotus japonicus
source: PMRD, original name: lja-miR2199
Taxonomy by NCBI:
Lotus japonicus Lotus Loteae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGATACACTAGCACGGGTCAC miRNA* GACCCGTTCTAGTGTATCAAG mismatches: 1 bulges: 0 |
pre-miRNA
ATCTGATGCACAATTGTGACCCGTTCTAGTGTATCAAGCGATTTTCAGTCCATTGATTCCATGTTTTAAGATAATTTTGAGAGTTCTCATATCTTGATAT
CTTGATCTGAAATTCTCTGATACACTAGCACGGGTCACCGTTGTAAGTCACGT
dot-bracket secondary structure
...((((..(((((.(((((((((.(((((((((((.(.((.((((((..((..(((........((((((((....((((....)))))))))))).))
).))..)))))).)).)))))))))))).))))))))).)))))..))))...
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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ATCTGATGCACAATTGTGACCCGTTCTAGTGTATCAAGCGATTTTCAGTCCATTGATTCCATGTTTTAAGATAATTTTGAGAGTTCTCATATCTTGATAT
CTTGATCTGAAATTCTCTGATACACTAGCACGGGTCACCGTTGTAAGTCACGT
dot-bracket secondary structure
...((((..(((((.(((((((((.(((((((((((.(.((.((((((..((..(((........((((((((....((((....)))))))))))).))
).))..)))))).)).)))))))))))).))))))))).)))))..))))...
SIMILARITIES| miRBase mtr-MIR2199: 0.000002 PMRD mtr-miR2199: 0.000002 microPC no hits | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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