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ABOUT THIS RECORD
ID:
MNEST048686
species:
Liriodendron tulipifera
miRNA family:
MIR159
source:
PMRD, original name:
ltu-miR159
Taxonomy by NCBI:
Liriodendron tulipifera
Liriodendron
Magnoliaceae
Magnoliales
magnoliids
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TTTGGATTGAAGGGAGCTCTA
miRNA*
ATGCTCTTTTACTCCTTGGT
mismatches:
9
bulges:
1
View larger
pre-miRNA
TTTGGATTGAAGGGAGCTCTA
CACC
ATGCTCTTTTACTCCTTGGT
GTTTGGCCTACTGGTTTGGTGGGCCACTGTTGATCTGCTGTAGACCAGATCAACG
GCTAGGATTCCTGCAAATCAGCATCCTCTTTTTATTGGAAATAAAACTGATGTTGTCATGAAATTCTTTGTAAGCATGCTCCACCCTTGTTCTTCAGTTG
TATTCAGTGTGTGGCCCATCCACCATGAGGCCTGCTCGATGAACTGCTTCGATTCGCAGATGTTCTTTTGGAAGATTTTACTGTTCTTTACTTTAATTTT
AATGAGCGTTAACGGGTGGATCTCCCCTTGCAGGAAATTGATATC
dot-bracket secondary structure
...(((...((((((((....
....
..))))))))..)))..(((
(((.((((((((.....)))))))).(((((((((((........))))))))))
)......(((((((((..(((((((....((((((.....))))))..)))))))........................(((((((....(((((.....
..((((.((.(((((((((.....))).)))).)).)).))))((((........))))...........)))))..(((.(((((..............
...))))).))).))))))).......)))))))))...))))))
SIMILARITIES
miRBase
vvi-MIR159c
:
0.000001
PMRD
vvi-miR159c
:
0.000001
microPC
miR159
:
0.0003
UniProt
no hits
RFAM
MIR159: 0.00002
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
not a miRNA
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