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ABOUT THIS RECORD

ID: MNEST048686
species: Liriodendron tulipifera
miRNA family: MIR159
source: PMRD, original name: ltu-miR159

Taxonomy by NCBI:
Liriodendron tulipifera Liriodendron Magnoliaceae Magnoliales magnoliids Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TTTGGATTGAAGGGAGCTCTA

miRNA*
ATGCTCTTTTACTCCTTGGT

mismatches: 9
bulges: 1

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pre-miRNA
TTTGGATTGAAGGGAGCTCTACACCATGCTCTTTTACTCCTTGGTGTTTGGCCTACTGGTTTGGTGGGCCACTGTTGATCTGCTGTAGACCAGATCAACG
GCTAGGATTCCTGCAAATCAGCATCCTCTTTTTATTGGAAATAAAACTGATGTTGTCATGAAATTCTTTGTAAGCATGCTCCACCCTTGTTCTTCAGTTG
TATTCAGTGTGTGGCCCATCCACCATGAGGCCTGCTCGATGAACTGCTTCGATTCGCAGATGTTCTTTTGGAAGATTTTACTGTTCTTTACTTTAATTTT
AATGAGCGTTAACGGGTGGATCTCCCCTTGCAGGAAATTGATATC


dot-bracket secondary structure
...(((...((((((((..........))))))))..)))..((((((.((((((((.....)))))))).(((((((((((........))))))))))
)......(((((((((..(((((((....((((((.....))))))..)))))))........................(((((((....(((((.....
..((((.((.(((((((((.....))).)))).)).)).))))((((........))))...........)))))..(((.(((((..............
...))))).))).))))))).......)))))))))...))))))



SIMILARITIES
miRBase vvi-MIR159c: 0.000001

PMRD vvi-miR159c: 0.000001

microPC miR159: 0.0003
UniProt no hits

RFAM MIR159: 0.00002

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
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