ABOUT THIS RECORDspecies: Medicago truncatula
miRNA family: MIR1510
source: PMRD, original name: mtr-miR1510b
Taxonomy by NCBI:
Medicago truncatula Medicago Trifolieae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA ACATGGTCGGTATCCCTGGAA miRNA* CCATGGATCCCTACCATGTGG mismatches: 4 bulges: 0 |
pre-miRNA
ACATCTAGTTAGTCATACCGATAGGCGAGAGAGATTTGCTACTGCAATTGTTGTTTTACCCGCTCCTCCCATCCCATGGATCCCTACCATGTGGACTCCA
TCATCATCAGATCCAATCTTGTGATAATAGAGTCACATGGTCGGTATCCCTGGAATGGAGGATCAGGTAAAACAACTTTTGCTTTAGAAATGATTCATTT
CTCATCACCTTCATCAGGTTTATGATTTCTGTCTGT
dot-bracket secondary structure
(((..(((..(((((((((((((((.(((((((((...(((..((((..(((((((((((.(.((((((.((.(((.((((.((.((((((((.((((.(
(.(((((.((((...)))).))))).)).)))))))))))).)).)))).))).)))))))).).)))))))))))..))))..))).........))))
))).)).)))..))).)))..)))))).)))..)))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Szittya G, Moxon S, Santos DM, Jing R, Fevereiro MP, Moulton V, Dalmay T, BMC Genomics. 9:593(2008)., "High-throughput sequencing of Medicago truncatula short RNAs identifies eight new miRNA families"
ACATCTAGTTAGTCATACCGATAGGCGAGAGAGATTTGCTACTGCAATTGTTGTTTTACCCGCTCCTCCCATCCCATGGATCCCTACCATGTGGACTCCA
TCATCATCAGATCCAATCTTGTGATAATAGAGTCACATGGTCGGTATCCCTGGAATGGAGGATCAGGTAAAACAACTTTTGCTTTAGAAATGATTCATTT
CTCATCACCTTCATCAGGTTTATGATTTCTGTCTGT
dot-bracket secondary structure
(((..(((..(((((((((((((((.(((((((((...(((..((((..(((((((((((.(.((((((.((.(((.((((.((.((((((((.((((.(
(.(((((.((((...)))).))))).)).)))))))))))).)).)))).))).)))))))).).)))))))))))..))))..))).........))))
))).)).)))..))).)))..)))))).)))..)))
SIMILARITIES| miRBase mtr-MIR1510b: 9e-133 PMRD mtr-miR1510b: 9e-133 microPC no hits | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Szittya G, Moxon S, Santos DM, Jing R, Fevereiro MP, Moulton V, Dalmay T, BMC Genomics. 9:593(2008)., "High-throughput sequencing of Medicago truncatula short RNAs identifies eight new miRNA families"
