ABOUT THIS RECORDspecies: Medicago truncatula
source: PMRD, original name: mtr-miR2088
Taxonomy by NCBI:
Medicago truncatula Medicago Trifolieae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA AGGCCTAGATTACATTGGAC miRNA* CCAATGTAATCTAGGTCTAC mismatches: 0 bulges: 0 |
pre-miRNA
TCTCTGTATCTCGAAGTAGACGGCGGCTTAACCGATGTAGGCCTAGATTACATTGGACAAAACAGTCCAAACTTGAGATGGTTACTTCTTGGTCCAATGT
AATCTAGGTCTACATCTGTTAAGTCTCTAAAGTATTCTGAAAGAGA
dot-bracket secondary structure
(((((...((..(((......((.((((((((.(((((((((((((((((((((((((.....(((...((((......))))))).....)))))))))
)))))))))))))))).)))))))).))......))).)).)))))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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TCTCTGTATCTCGAAGTAGACGGCGGCTTAACCGATGTAGGCCTAGATTACATTGGACAAAACAGTCCAAACTTGAGATGGTTACTTCTTGGTCCAATGT
AATCTAGGTCTACATCTGTTAAGTCTCTAAAGTATTCTGAAAGAGA
dot-bracket secondary structure
(((((...((..(((......((.((((((((.(((((((((((((((((((((((((.....(((...((((......))))))).....)))))))))
)))))))))))))))).)))))))).))......))).)).)))))
SIMILARITIES| miRBase mtr-MIR2088a: 3e-79 PMRD mtr-miR2088: 3e-79 microPC no hits | UniProt sp|O04197|COI1_ARATH: 0.00007 RFAM no hits |
Identical with: mtr-MIR2088a from miRBase (MNEST040755) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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