ABOUT THIS RECORDspecies: Oryza sativa
miRNA family: MIR156
source: PMRD, original name: osa-miR156a
Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGACAGAAGAGAGTGAGCAC miRNA* GCTCACTTCTCTCTCTGTCACC mismatches: 0 bulges: 2 |
pre-miRNA
GGAGGGTGACAGAAGAGAGTGAGCACACGTGGTTGTTTCCTTGCATAAATGATGCCTATGCTTGGAGCTACGCGTGCTCACTTCTCTCTCTGTCACCTCC
dot-bracket secondary structure
(((((.((((((((((((((((((((.((((((....(((..(((((.........)))))..))))))))).)))))))).))))).))))))))))))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
deep sequencing data evidence
references
[1] Reinhart BJ, Weinstein EG, Rhoades MW, Bartel B, Bartel DP, Genes Dev. 16:1616-1626(2002)., "MicroRNAs in plants"
GGAGGGTGACAGAAGAGAGTGAGCACACGTGGTTGTTTCCTTGCATAAATGATGCCTATGCTTGGAGCTACGCGTGCTCACTTCTCTCTCTGTCACCTCC
dot-bracket secondary structure
(((((.((((((((((((((((((((.((((((....(((..(((((.........)))))..))))))))).)))))))).))))).))))))))))))
SIMILARITIES| miRBase osa-MIR156a: 5e-52 PMRD osa-miRf10111-akr: 5e-52 microPC miR156: 0.00000008 | UniProt no hits RFAM mir-156: 2e-45 |
Identical with: osa-miRf10111-akr from PMRD (MNEST049326) |
MOREmiRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
deep sequencing data evidence
references
[1] Reinhart BJ, Weinstein EG, Rhoades MW, Bartel B, Bartel DP, Genes Dev. 16:1616-1626(2002)., "MicroRNAs in plants"
