ABOUT THIS RECORDspecies: Oryza sativa
source: PMRD, original name: osa-miRf12087-akr
Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CCTGGGTCCACATGTCAGCCTCT miRNA* AGGCTGATATGTGGGCCCGGGTG mismatches: 1 bulges: 0 |
pre-miRNA
CCAAATACCACCTGGGTCCACATGTCAGCCTCTTTTCCCATTCAAATAAAAGTGACGTGGGACTGGATGGTGTGTGAGGCTGATATGTGGGCCCGGGTGG
CATTTGG
dot-bracket secondary structure
((((((.(((((((((((((((((((((((((....((((((((...................))))))).)...)))))))))))))))))))))))))
.))))))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
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CCAAATACCACCTGGGTCCACATGTCAGCCTCTTTTCCCATTCAAATAAAAGTGACGTGGGACTGGATGGTGTGTGAGGCTGATATGTGGGCCCGGGTGG
CATTTGG
dot-bracket secondary structure
((((((.(((((((((((((((((((((((((....((((((((...................))))))).)...)))))))))))))))))))))))))
.))))))
SIMILARITIES| miRBase osa-MIR1440: 0.000000000000001 PMRD osa-miRf12088-akr: 9e-48 microPC no hits | UniProt no hits RFAM no hits |
Identical with: osa-miRf12088-akr from PMRD (MNEST051303) |
MOREmiRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
