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ABOUT THIS RECORD

ID: MNEST051319
species: Persea americana
miRNA family: MIR157
source: PMRD, original name: pam-miR157

Taxonomy by NCBI:
Persea americana Persea Lauraceae Laurales magnoliids Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TTGACAGAAGAGAGAGAGCAC

miRNA*
GGCGCCCTTGAATGACAAGAGCTTGTCAAAGTCATGACAACGAAGAGTAGAGATGGTGCTTGGA

mismatches: 13
bulges: 104

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pre-miRNA
TTGACAGAAGAGAGAGAGCACGCCGAATGTCCGGTGTTGCATCCAGGTTAGAAGTGATCATGGATGGCTTCTAGACCTTGATTGAGGACCCTCGGCAGTG
GCGCCCTTGAATGACAAGAGCTTGTCAAAGTCATGACAACGAAGAGTAGAGATGGTGCTTGGA
AGCTCTACACCAGGCAGATGCAGATGCCCATCAATGC
CTTCTCCTCTCGTAGA


dot-bracket secondary structure
...........(((((..((((((((..((((........(((.(((((((((((.(((...))).)))))).))))).)))...))))..))))).)))
..((.((((.....)))).)).(((((......)))))..((((.(((..((((((((((((.
.........)))))))...((....)))))))..)))
))))..))))).....



SIMILARITIES
miRBase far-MIR529: 0.0002

PMRD tae-miR156b: 0.00001

microPC miR157: 0.0002
UniProt no hits

RFAM no hits

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
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