ABOUT THIS RECORDspecies: Populus euphratica
miRNA family: MIR2912
source: PMRD, original name: peu-miR2912b
Taxonomy by NCBI:
Populus euphratica Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCTAGAACTCGAGATATGGGC miRNA* CTATGTCTTAGCTTTCTATC mismatches: 2 bulges: 3 |
pre-miRNA
TCTAGAACTCGAGATATGGGCTGAACACTGAATAGTGTCTAGGCTGCAGGACAGATTTCGACTTCTCTTTTGTTGCTACAATTTGAACTTGAAAACGGCT
GTTTTGAATCTTAGACTCTTCATGAAAGTTTTAGGTCTATGTCTTAGCTTTCTATC
dot-bracket secondary structure
..(((((((.((((((((((((.((.(((....((.(((((((...((((((((.((((((.(((....((((....))))...))).))))))....))
))))))...))))))).)).......))).)).))))))))))))))..)))))..
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Li B, Yin W, Xia X, Biochem Biophys Res Commun. 388:272-277(2009)., "Identification of microRNAs and their targets from Populus euphratica"
TCTAGAACTCGAGATATGGGCTGAACACTGAATAGTGTCTAGGCTGCAGGACAGATTTCGACTTCTCTTTTGTTGCTACAATTTGAACTTGAAAACGGCT
GTTTTGAATCTTAGACTCTTCATGAAAGTTTTAGGTCTATGTCTTAGCTTTCTATC
dot-bracket secondary structure
..(((((((.((((((((((((.((.(((....((.(((((((...((((((((.((((((.(((....((((....))))...))).))))))....))
))))))...))))))).)).......))).)).))))))))))))))..)))))..
SIMILARITIES| miRBase peu-MIR2912b: 3e-85 PMRD peu-miR2912a: 1e-19 microPC no hits | UniProt no hits RFAM no hits |
Identical with: peu-MIR2912b from miRBase (MNEST041285) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Li B, Yin W, Xia X, Biochem Biophys Res Commun. 388:272-277(2009)., "Identification of microRNAs and their targets from Populus euphratica"
