ABOUT THIS RECORDspecies: Populus euphratica
source: PMRD, original name: peu-miR2915
Taxonomy by NCBI:
Populus euphratica Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CCCGTCTAGCTCAGTTGGTA miRNA* CAAACCGAGCGCGGACGGCGA mismatches: 4 bulges: 1 |
pre-miRNA
TGCAAACCGAGCGCGGACGGCGAACTGGAGGGGACCACGCATAATATAAATATATATTATATGTGCGATCCCCAACACAACCAAGCCCGTCTAGCTCAGT
TGGTA
dot-bracket secondary structure
(((.(((.((((..(((((((....((..((((((((((.((((((((....)))))))).)))).).)))))..)).......).)))))).)))).))
).)))
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
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TGCAAACCGAGCGCGGACGGCGAACTGGAGGGGACCACGCATAATATAAATATATATTATATGTGCGATCCCCAACACAACCAAGCCCGTCTAGCTCAGT
TGGTA
dot-bracket secondary structure
(((.(((.((((..(((((((....((..((((((((((.((((((((....)))))))).)))).).)))))..)).......).)))))).)))).))
).)))
SIMILARITIES| miRBase csi-MIR399b: 0.0003 PMRD tae-miR2018: 0.00008 microPC no hits | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
download this record
