ABOUT THIS RECORDspecies: Populus euphratica
source: PMRD, original name: peu-miR2916
Taxonomy by NCBI:
Populus euphratica Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGGGGACTCGAAGACGATCATAT miRNA* ATGTTGCTTCTAGGAGTCCGCCA mismatches: 3 bulges: 6 |
pre-miRNA
TGGGGACTCGAAGACGATCATATACCATCCTAGTCTCAACCATAAACGATGCCGACCAGGGATTGGCGGATGTTGCTTCTAGGAGTCCGCCA
dot-bracket secondary structure
.((((((((((((.(((.(((...(((((((.(((.....(((.....)))..)))..)))).)))...))))))))))...)))))).)).
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Li B, Yin W, Xia X, Biochem Biophys Res Commun. 388:272-277(2009)., "Identification of microRNAs and their targets from Populus euphratica"
TGGGGACTCGAAGACGATCATATACCATCCTAGTCTCAACCATAAACGATGCCGACCAGGGATTGGCGGATGTTGCTTCTAGGAGTCCGCCA
dot-bracket secondary structure
.((((((((((((.(((.(((...(((((((.(((.....(((.....)))..)))..)))).)))...))))))))))...)))))).)).
SIMILARITIES| miRBase peu-MIR2916: 3e-47 PMRD no hits microPC no hits | UniProt no hits RFAM SSU_rRNA_eukarya: 5e-46 |
Identical with: peu-MIR2916 from miRBase (MNEST041287) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Li B, Yin W, Xia X, Biochem Biophys Res Commun. 388:272-277(2009)., "Identification of microRNAs and their targets from Populus euphratica"
