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ABOUT THIS RECORD

ID: MNEST051601
species: Populus trichocarpa
miRNA family: MIR156
source: PMRD, original name: ptc-miR156k

Taxonomy by NCBI:
Populus trichocarpa Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TGACAGAAGAGAGGGAGCAC

miRNA*
GCTTTCTCTTCTTCTGTCACC

mismatches: 2
bulges: 1

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pre-miRNA
TTATGCATGCTGACAGAAGAGAGGGAGCACAACCCTGTAATAGCTAAAGAGAGTCTTTGCTTTTGTTGGACTGTGCTTTCTCTTCTTCTGTCACCAACCA
A


dot-bracket secondary structure
.......((.(((((((((((((..((((((..((..(((.(((.((((.....))))))).)))..))..))))))..))).)))))))))).))....
.



SIMILARITIES
miRBase ptc-MIR156k: 1e-52

PMRD lja-miR157b: 3e-16

microPC miR156: 0.0000000003
UniProt no hits

RFAM mir-156: 0.000001

Identical with: ptc-MIR156k from miRBase (MNEST041298)

MORE

miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
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references

[1] Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm, Science. 313:1596-1604(2006)., "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)"




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