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ABOUT THIS RECORD

ID: MNEST051619
species: Populus trichocarpa
miRNA family: MIR164
source: PMRD, original name: ptc-miR164a

Taxonomy by NCBI:
Populus trichocarpa Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TGGAGAAGCAGGGCACGTGCA

miRNA*
CACGCGCTCTTCTTCTCCAAC

mismatches: 2
bulges: 0

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pre-miRNA
GGTTCCTTGCTGGAGAAGCAGGGCACGTGCAAAATCCTGATGAAGTGCTTACACTTTGCACGCGCTCTTCTTCTCCAACACGGGC

dot-bracket secondary structure
...(((.((.((((((((.(((((.(((((((...........((((....))))))))))).))))).)))))))).)).))).


SIMILARITIES
miRBase ptc-MIR164a: 4e-43

PMRD ptc-miRf10040-akr: 4e-43

microPC miR164: 0.00002
UniProt no hits

RFAM MIR164: 4e-34

Identical with: ptc-MIR164a from miRBase (MNEST041316)

MORE

miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
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references

[1] Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm, Science. 313:1596-1604(2006)., "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)"
[2] Lu S, Sun YH, Shi R, Clark C, Li L, Chiang VL, Plant Cell. 17:2186-2203(2005)., "Novel and mechanical stress-responsive MicroRNAs in Populus trichocarpa that are absent from Arabidopsis"




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