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ABOUT THIS RECORD

ID: MNEST051620
species: Populus trichocarpa
miRNA family: MIR164
source: PMRD, original name: ptc-miR164b

Taxonomy by NCBI:
Populus trichocarpa Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TGGAGAAGCAGGGCACGTGCA

miRNA*
CATGTGCCTGTCTTCCTCATC

mismatches: 6
bulges: 0

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pre-miRNA
GTGAGCAAGATGGAGAAGCAGGGCACGTGCACTACTAACTCATGCACACAGAGAGGGAGACGCATTTCTTGCTGGAGTTACGAGTTACGACTCTTACCTA
CTATTGATTTTGTTAGCTCCAGTGAGTTAGTTATTCATGTGCCTGTCTTCCTCATCATGATC


dot-bracket secondary structure
.....((.((((..((((..(((((((((....((((((((........(((((((....).).))))).((((((((((.((((....)))).......
(....).......))))))))))))))))))....)))))))))..))))..)))).))...



SIMILARITIES
miRBase ptc-MIR164b: 9e-89

PMRD ptc-miRf11079-akr: 9e-89

microPC miR164: 4e-32
UniProt no hits

RFAM MIR164: 4e-79

Identical with: ptc-miRf11079-akr from PMRD (MNEST052901)

MORE

miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
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references

[1] Dezulian T, Palatnik JF, Huson DH, Weigel D, http://genomebiology.com/2005/6/11/p13 (2005)., "Conservation and divergence of microRNA families in plants"
[2] Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm, Science. 313:1596-1604(2006)., "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)"
[3] Lu S, Sun YH, Shi R, Clark C, Li L, Chiang VL, Plant Cell. 17:2186-2203(2005)., "Novel and mechanical stress-responsive MicroRNAs in Populus trichocarpa that are absent from Arabidopsis"




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