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ABOUT THIS RECORD

ID: MNEST051628
species: Populus trichocarpa
miRNA family: MIR166
source: PMRD, original name: ptc-miR166d

Taxonomy by NCBI:
Populus trichocarpa Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TCGGACCAGGCTTCATTCCCC

miRNA*
GGAATGTTGGCTGGCTCGAAG

mismatches: 5
bulges: 0

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pre-miRNA
CGTGAGTTGAGGGGAATGTTGGCTGGCTCGAAGCTTAAGCAAAGAGTTTTCTCTCAAGAAACAACTGTTAAGGCTTCGGACCAGGCTTCATTCCCCTCAA
CCAAT


dot-bracket secondary structure
..((.(((((((((((((..(.((((..((((((((.((((....(((((.......)))))...)))).))))))))..)))).)..))))))))))))
)))..



SIMILARITIES
miRBase ptc-MIR166d: 6e-55

PMRD ptc-miR166f: 2e-39

microPC miR166: 2e-30
UniProt no hits

RFAM mir-166: 2e-48

Identical with: ptc-MIR166d from miRBase (MNEST041325)

MORE

miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
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references

[1] Dezulian T, Palatnik JF, Huson DH, Weigel D, http://genomebiology.com/2005/6/11/p13 (2005)., "Conservation and divergence of microRNA families in plants"
[2] Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm, Science. 313:1596-1604(2006)., "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)"




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