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ABOUT THIS RECORD

ID: MNEST051633
species: Populus trichocarpa
miRNA family: MIR166
source: PMRD, original name: ptc-miR166i

Taxonomy by NCBI:
Populus trichocarpa Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TCGGACCAGGCTTCATTCCCC

miRNA*
GGAATGTTGTTTGGTTCAAGG

mismatches: 4
bulges: 0

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pre-miRNA
TGTCTTTTGAGGGGAATGTTGTTTGGTTCAAGGCCTGGCCACCCCATGTCTTGGAATTTAAAATATCATGTCCTCGGACCAGGCTTCATTCCCCTCAATT
ACT


dot-bracket secondary structure
.((...((((((((((((..(((((((((.((((.(((.....))).)))).(((...............)))..)))))))))..))))))))))))..
)).



SIMILARITIES
miRBase ptc-MIR166i: 9e-54

PMRD ptc-miR166l: 0.000000000000006

microPC miR166: 0.000005
UniProt no hits

RFAM mir-166: 4e-47

Identical with: ptc-MIR166i from miRBase (MNEST041330)

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miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
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references

[1] Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm, Science. 313:1596-1604(2006)., "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)"




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