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ABOUT THIS RECORD

ID: MNEST051634
species: Populus trichocarpa
miRNA family: MIR166
source: PMRD, original name: ptc-miR166j

Taxonomy by NCBI:
Populus trichocarpa Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TCGGACCAGGCTTCATTCCCC

miRNA*
GGAATGTTGTCTGGCTCGAGG

mismatches: 4
bulges: 0

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pre-miRNA
TCTTTTTTGAGGGGAATGTTGTCTGGCTCGAGGACTTTTTGTTCATCAATCTAATCGAACTTTCTACCTGTAGATCTAGTATCTTATTTAAGATTGATCA
CGTATTAGGGTTGTCGGACCAGGCTTCATTCCCCCCAATCATT


dot-bracket secondary structure
......(((.((((((((..((((((..(((.((((((.(((..((((((((((..(((((.((((....))))...))).))....)).)))))))).)
))....)))))).)))..))))))..)))))))).))).....



SIMILARITIES
miRBase ptc-MIR166k: 2e-77

PMRD ptc-miR166k: 2e-77

microPC miR166: 0.0000005
UniProt no hits

RFAM mir-166: 7e-71

Identical with: ptc-MIR166j from miRBase (MNEST041331)

MORE

miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
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references

[1] Dezulian T, Palatnik JF, Huson DH, Weigel D, http://genomebiology.com/2005/6/11/p13 (2005)., "Conservation and divergence of microRNA families in plants"
[2] Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm, Science. 313:1596-1604(2006)., "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)"




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