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ABOUT THIS RECORD

ID: MNEST051639
species: Populus trichocarpa
miRNA family: MIR166
source: PMRD, original name: ptc-miR166o

Taxonomy by NCBI:
Populus trichocarpa Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TCGGACCAGGCTTCATTCCTT

miRNA*
GGAATGAAGTTTGATCCAAGA

mismatches: 4
bulges: 0

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pre-miRNA
AAGGGGTGTTTGGAATGAAGTTTGATCCAAGATCCTTGTCTCTCCCGTTCATTTAGTAATGTTACTGCTAGGTTTCGCTATGTATTGATCAGTGTATACA
CAGCAGCTACGAGCTAGGCCTTGTGTTTCAGATTTTAGCTTCAATATAGAGTGAGCACTAGTGATAGAGTTTGATTCAAGATCCATCTCATGTGTGCTAG
CTAGCTTTTAAATTTTTAATCAGATCCCTACTTCCTGTTAATTCTTAGGTTTTATCTTGCAAGTTATTATATTTAGTAAACATCATGAACTGATCTCGGA
CCAGGCTTCATTCCTT
ACACCGAA


dot-bracket secondary structure
....(((((..(((((((((((((.(((.(((((((((((.(((..((.((((....))))..)).(((((..((((((.((((((((...(((....))
)..........(((((((..(((.....)))..))))))))))))))).))))))..)))))....)))...))..)))).......(((((..(((.((
.(((..(((((....(((((..((........))..)))))...)))))..))).)).)))..((((((....))))))....)))))...))))).)))
.)))))))))))))..
)))))...



SIMILARITIES
miRBase no hits

PMRD ptc-miR166n: 9e-26

microPC miR166: 0.0000003
UniProt no hits

RFAM mir-166: 1e-179

Identical with: ptc-MIR166o from miRBase (MNEST041336)

MORE

miRNEST target predictions
non-miRNEST targets
HuntMi prediction: not a miRNA
additional data
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references

[1] Dezulian T, Palatnik JF, Huson DH, Weigel D, http://genomebiology.com/2005/6/11/p13 (2005)., "Conservation and divergence of microRNA families in plants"
[2] Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm, Science. 313:1596-1604(2006)., "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)"




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