miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Back to search results



ABOUT THIS RECORD

ID: MNEST051815
species: Populus trichocarpa
miRNA family: MIR1446
source: PMRD, original name: ptc-miR1446c

Taxonomy by NCBI:
Populus trichocarpa Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TTCTGAACTCTCTCCCTCAA

miRNA*
AAGGTGGGAGGCTCAGAAAA

mismatches: 3
bulges: 2

View larger
pre-miRNA
CCAACTTTTTCTGAACTCTCTCCCTCAACTGCTATTCTAGAGCTTCCTGAGCTAACCCTTGTGTTTCTGTGTAGCAGTCAAGGTGGGAGGCTCAGAAAAT
GTTGG


dot-bracket secondary structure
(((((.((((((((.(.((((((((..((((((((.(..((((....((((......)))).))))..).))))))))..))).)))))).)))))))).
)))))



SIMILARITIES
miRBase ptc-MIR1446c: 6e-55

PMRD ptc-miR1446e: 4e-19

microPC no hits
UniProt no hits

RFAM MIR1446: 1e-53

Identical with: ptc-MIR1446c from miRBase (MNEST041518)

MORE

miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record

references

[1] Lu S, Sun YH, Chiang VL, Plant J. 55:131-151(2008)., "Stress-responsive microRNAs in Populus"




Liczniki na strone;