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ABOUT THIS RECORD

ID: MNEST051819
species: Populus trichocarpa
miRNA family: MIR1448
source: PMRD, original name: ptc-miR1448

Taxonomy by NCBI:
Populus trichocarpa Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
CTTTCCAACGCCTCCCATAC

miRNA*
ATGGGAGGATTGGACAGTA

mismatches: 2
bulges: 1

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pre-miRNA
GTTACGGGTATGGGAGGATTGGACAGTACTGCTTGGTTTTAATTAACCAAAGTCTGTTCTTTCCAACGCCTCCCATACCGGTAAT

dot-bracket secondary structure
(((((.(((((((((((.(((((.((.((.((((((((......)))).))))..)).)).)))))..))))))))))).)))))


SIMILARITIES
miRBase ptc-MIR1448: 4e-43

PMRD no hits

microPC miR1448: 2e-32
UniProt no hits

RFAM no hits

Identical with: ptc-MIR1448 from miRBase (MNEST041522)

MORE

miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
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references

[1] Lu S, Sun YH, Chiang VL, Plant J. 55:131-151(2008)., "Stress-responsive microRNAs in Populus"




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