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ABOUT THIS RECORD

ID: MNEST051820
species: Populus trichocarpa
source: PMRD, original name: ptc-miR1449

Taxonomy by NCBI:
Populus trichocarpa Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TGAGGTGCACGTAAGATAACTC

miRNA*
GTAAATAGTGCTTGCATTAAT

mismatches: 4
bulges: 3

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pre-miRNA
GATTAGTTGAGGTGCACGTAAGATAACTCGATGTTAATTTAAAAAAACAAACAGGATCTCAATAAAATAAATTTAAAAAATACAGAAGGGTAAATAGTGC
TTGCATTAAT
TAATC


dot-bracket secondary structure
(((((((((..(((((.(((..((.((((..(((...((((((...........(....)...........))))))....)))...))))..))..)))
.)))))))))
)))))



SIMILARITIES
miRBase ptc-MIR1449: 4e-16

PMRD no hits

microPC no hits
UniProt no hits

RFAM no hits

MORE

miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
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references

[1] Lu S, Sun YH, Chiang VL, Plant J. 55:131-151(2008)., "Stress-responsive microRNAs in Populus"




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