ABOUT THIS RECORDspecies: Populus trichocarpa
source: PMRD, original name: ptc-miR1450
Taxonomy by NCBI:
Populus trichocarpa Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTCAATGGCTCGGTCAGGTTAC miRNA* AGTCTGACCCGAGCCATTGAAGA mismatches: 2 bulges: 1 |
pre-miRNA
GAGTCAATTAGGTCAGTTGTGTAGTCTGACCCGAGCCATTGAAGACAATCATTTGTTGGTGTCTCATTGGATTTGTTACCTGACAGTGTTTATCCAACAA
ATGATTCTCTTCAATGGCTCGGTCAGGTTACACAAGCAATCTAGTTGGCTC
dot-bracket secondary structure
(((((((((((((...(((((((..((((((.(((((((((((((.(((((((((((((.....(((((..............))))).....)))))))
)))))).)))))))))))))))))))..)))))))...)))))))))))))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Lu S, Sun YH, Chiang VL, Plant J. 55:131-151(2008)., "Stress-responsive microRNAs in Populus"
GAGTCAATTAGGTCAGTTGTGTAGTCTGACCCGAGCCATTGAAGACAATCATTTGTTGGTGTCTCATTGGATTTGTTACCTGACAGTGTTTATCCAACAA
ATGATTCTCTTCAATGGCTCGGTCAGGTTACACAAGCAATCTAGTTGGCTC
dot-bracket secondary structure
(((((((((((((...(((((((..((((((.(((((((((((((.(((((((((((((.....(((((..............))))).....)))))))
)))))).)))))))))))))))))))..)))))))...)))))))))))))
SIMILARITIES| miRBase ptc-MIR1450: 3e-82 PMRD no hits microPC no hits | UniProt no hits RFAM no hits |
Identical with: ptc-MIR1450 from miRBase (MNEST041524) |
MOREmiRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Lu S, Sun YH, Chiang VL, Plant J. 55:131-151(2008)., "Stress-responsive microRNAs in Populus"
