miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Back to search results



ABOUT THIS RECORD

ID: MNEST052020
species: Populus trichocarpa
source: PMRD, original name: ptc-miRf10198-akr

Taxonomy by NCBI:
Populus trichocarpa Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
AACCCGGTCGACCCGGGTAAACCC

miRNA*
ATTGGCCCGGGACCCGGCCGACCCTG

mismatches: 7
bulges: 2

View larger
pre-miRNA
CTGGATTGGCCCGGGACCCGGCCGACCCTGGCATGAGACCGGTCCGGGTCTAAGCAAAAACCCGCCTGGGAGTTGGCTCAGCGAAACCCGGTCGACCCGG
GTAAACCC
AG


dot-bracket secondary structure
((((.((.(((((((...((((((....(.((.((((.(((.(((((((..............)))))))...))))))))).)....)))))).)))))
)).)).))
))



SIMILARITIES
miRBase no hits

PMRD ptc-miRf11940-akr: 2e-21

microPC no hits
UniProt no hits

RFAM no hits

MORE

miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: not a miRNA
additional data
download this record





Liczniki na strone;