ABOUT THIS RECORDspecies: Populus trichocarpa
source: PMRD, original name: ptc-miRf10208-akr
Taxonomy by NCBI:
Populus trichocarpa Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GACCCAAGCGCCAGGTGGCGCTCGG miRNA* ATGCGCCAGGTGGCTCTCGGGCGA mismatches: 6 bulges: 1 |
pre-miRNA
ACACACCCATGCGCCAGGTGGCTCTCGGGCGAAGCCAATCGAGCCTTTTGCCATGACCCAAGCGCCAGGTGGCGCTCGGTTGTGT
dot-bracket secondary structure
(((((.((..((((((..((((.((.(((((..((.((........)).))..)).))).)).))))..))))))..)).)))))
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: not a miRNA
additional data
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ACACACCCATGCGCCAGGTGGCTCTCGGGCGAAGCCAATCGAGCCTTTTGCCATGACCCAAGCGCCAGGTGGCGCTCGGTTGTGT
dot-bracket secondary structure
(((((.((..((((((..((((.((.(((((..((.((........)).))..)).))).)).))))..))))))..)).)))))
SIMILARITIES| miRBase no hits PMRD ptc-miRf12121-akr: 4e-43 microPC no hits | UniProt no hits RFAM no hits |
Identical with: ptc-miRf12121-akr from PMRD (MNEST053943) |
MOREmiRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: not a miRNA
additional data
download this record
