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ABOUT THIS RECORD

ID: MNEST052215
species: Populus trichocarpa
source: PMRD, original name: ptc-miRf10393-akr

Taxonomy by NCBI:
Populus trichocarpa Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TCTCGATATGTATCCCAACATTG

miRNA*
ATGTTGGGATTGGTATCGAGACA

mismatches: 2
bulges: 0

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pre-miRNA
AATATTTTACCAATGTTGGGATTGGTATCGAGACATGCTTAATACTTACCAATGTTGCTAACTTACCAATCTCCATGTTTCCAAAACCATGATGAAGGCA
AGTATTAAGCAAGTCTCGATATGTATCCCAACATTGATAAACTGTT


dot-bracket secondary structure
((((.((((.((((((((((((..((((((((((.((((((((((((.((...((.....)).......((..((((..........))))..)).)).)
))))))))))).))))))))))..)))))))))))).)))).))))



SIMILARITIES
miRBase no hits

PMRD ptc-miRf11699-akr: 3e-79

microPC no hits
UniProt no hits

RFAM snoR71: 2e-16

Identical with: ptc-miRf10392-akr from PMRD (MNEST052214)

MORE

miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
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