ABOUT THIS RECORDspecies: Populus trichocarpa
source: PMRD, original name: ptc-miRf10403-akr
Taxonomy by NCBI:
Populus trichocarpa Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CCGATTCTGGACTGGGCAGC miRNA* TGCCGATGCAGAAATCGGCA mismatches: 2 bulges: 2 |
pre-miRNA
GTTTTCGCTGCCGATGCAGAAATCGGCAGCGACGCAGTTTTCGCTGCCGATGCAGAAATCAGCAGCGATGCAGTATTCGCTGCCGATTCTGGACTGGGCA
GCGATGC
dot-bracket secondary structure
....((((((((.((.(((((.((((((((((.((.((..(((((((.(((......))).))))))).)).))..))))))))))))))).).).))))
))))...
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
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GTTTTCGCTGCCGATGCAGAAATCGGCAGCGACGCAGTTTTCGCTGCCGATGCAGAAATCAGCAGCGATGCAGTATTCGCTGCCGATTCTGGACTGGGCA
GCGATGC
dot-bracket secondary structure
....((((((((.((.(((((.((((((((((.((.((..(((((((.(((......))).))))))).)).))..))))))))))))))).).).))))
))))...
SIMILARITIES| miRBase no hits PMRD ptc-miRf12422-akr: 3e-44 microPC no hits | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
download this record
