miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Back to search results



ABOUT THIS RECORD

ID: MNEST052228
species: Populus trichocarpa
source: PMRD, original name: ptc-miRf10406-akr

Taxonomy by NCBI:
Populus trichocarpa Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TTCTTCAGGCCATCCAGGCT

miRNA*
CCCAGGCCGGCCTGATTGATGT

mismatches: 5
bulges: 2

View larger
pre-miRNA
GGCTGCGGCCCAGGCCGGCCTGATTGATGTCCGAGAGCAGGGCTGCCATTTCCGCCTTGCTAGGCAACTGCTTTTCCAGCTGCGTCACATATTGCTGCAC
CTGCTCACGTTGCTTCTTCAGGCCATCCAGGCTGACGGCC


dot-bracket secondary structure
((((((((((..((..(((((((..((.((.((.(((((((((.((.......((((....))))....(((.....))).............)).)).)
)))))).))..)).)).)))))))..)).))))).)))))



SIMILARITIES
miRBase no hits

PMRD no hits

microPC no hits
UniProt no hits

RFAM no hits

MORE

miRNEST target predictions
non-miRNEST targets
HuntMi prediction: not a miRNA
download this record





Liczniki na strone;