ABOUT THIS RECORDspecies: Populus trichocarpa
miRNA family: MIRf536
source: PMRD, original name: ptc-miRf10576-akr
Taxonomy by NCBI:
Populus trichocarpa Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CATTGGACTGAAGGGAGCTCC miRNA* TGCTCCTTTTAGTCCAATACG mismatches: 2 bulges: 0 |
pre-miRNA
GGAGGGGCTGAGGTGCTCCTTTTAGTCCAATACGGAGGGCTGAGAAGCGGCTAGAGCTGCCATCTCATGCATTTAGGCAATGCTTAACATTTGACGAAGA
GAGGTTAAGCTTGGCCACTTGCATGGTGTGGGAGCAACTCCTTCCGCATGCTTTGCTCGCCCATTGGACTGAAGGGAGCTCCTGGTTTTACC
dot-bracket secondary structure
((..(((((.(((.(((((((((((((((((..((.((((.(((..((((...(((((.((((..((((((....(((...(((((((.(((.....)))
...)))))))...)))...))))))..)))).)))...))...))))...))).)))).)).))))))))))))))))).))))))))..))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
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GGAGGGGCTGAGGTGCTCCTTTTAGTCCAATACGGAGGGCTGAGAAGCGGCTAGAGCTGCCATCTCATGCATTTAGGCAATGCTTAACATTTGACGAAGA
GAGGTTAAGCTTGGCCACTTGCATGGTGTGGGAGCAACTCCTTCCGCATGCTTTGCTCGCCCATTGGACTGAAGGGAGCTCCTGGTTTTACC
dot-bracket secondary structure
((..(((((.(((.(((((((((((((((((..((.((((.(((..((((...(((((.((((..((((((....(((...(((((((.(((.....)))
...)))))))...)))...))))))..)))).)))...))...))))...))).)))).)).))))))))))))))))).))))))))..))
SIMILARITIES| miRBase ptc-MIR319e: 1e-106 PMRD ptc-miR319e: 1e-106 microPC miR319: 0.0006 | UniProt no hits RFAM MIR159: 7e-78 |
Identical with: ptc-miR319e from PMRD (MNEST051711) |
MOREmiRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
