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ABOUT THIS RECORD

ID: MNEST052412
species: Populus trichocarpa
source: PMRD, original name: ptc-miRf10590-akr

Taxonomy by NCBI:
Populus trichocarpa Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TGAGATTGAGAGCTTACTCC

miRNA*
AGAAGCTCCCAATCTCCCT

mismatches: 2
bulges: 1

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pre-miRNA
ATGGTTGGAGAAGCTCCCAATCTCCCTCAGAGGCTTCCAATATCTCAGTTTATAGTAATTGCTTCAAATAATGAGAATGTTGGATGCCTTTGGGTGAGAT
TGAGAGCTTACTCC
CCAT


dot-bracket secondary structure
((((..((((((((((.(((((((.(((((((((.((((((((((((((((..(((....)))..))))..)))).)))))))).))))))))).)))))
)).)))))).))))
))))



SIMILARITIES
miRBase ptc-MIR477b: 6e-43

PMRD ptc-miRf11216-akr: 3e-57

microPC no hits
UniProt no hits

RFAM MIR477: 7e-46

Identical with: ptc-miR477b from PMRD (MNEST051778)

MORE

miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
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