miRNEST 2.0, an integrative microRNA resource :: Browse
Home
Browse miRNAs
Deep-seq predictions
Mirtrons
miRNA genes
Degradomes
Download
Upload
Contact
Back to search results
ABOUT THIS RECORD
ID:
MNEST052412
species:
Populus trichocarpa
source:
PMRD, original name:
ptc-miRf10590-akr
Taxonomy by NCBI:
Populus trichocarpa
Populus
Saliceae
Salicaceae
Malpighiales
fabids
rosids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TGAGATTGAGAGCTTACTCC
miRNA*
AGAAGCTCCCAATCTCCCT
mismatches:
2
bulges:
1
View larger
pre-miRNA
ATGGTTGG
AGAAGCTCCCAATCTCCCT
CAGAGGCTTCCAATATCTCAGTTTATAGTAATTGCTTCAAATAATGAGAATGTTGGATGCCTTTGGG
TGAGAT
TGAGAGCTTACTCC
CCAT
dot-bracket secondary structure
((((..((
((((((((.(((((((.((
(((((((.((((((((((((((((..(((....)))..))))..)))).)))))))).)))))))))
.)))))
)).)))))).))))
))))
SIMILARITIES
miRBase
ptc-MIR477b
:
6e-43
PMRD
ptc-miRf11216-akr
:
3e-57
microPC
no hits
UniProt
no hits
RFAM
MIR477: 7e-46
Identical with:
ptc-miR477b
from PMRD (
MNEST051778
)
MORE
miRNEST target predictions
non-miRNEST targets
HuntMi prediction:
true miRNA
additional data
download this record