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ABOUT THIS RECORD

ID: MNEST052425
species: Populus trichocarpa
source: PMRD, original name: ptc-miRf10603-akr

Taxonomy by NCBI:
Populus trichocarpa Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
GGGTTGGGCGTGGACACGTC

miRNA*
CGTGTCCAGGTCCAACATGG

mismatches: 2
bulges: 0

View larger
pre-miRNA
TGGACGTGTCCAGGTCCAACATGGGGTTAAGCGAGTTGGACATGGTCACATCTAAACCCGACCGCGTCCAAACAAAATGTGGGGTTGGGCGTGGACACGT
C
CA


dot-bracket secondary structure
.(((((((((((.(((((((.(.(.(((.......((((((.(((((............))))).))))))....))).).).))))))).)))))))))
)
).



SIMILARITIES
miRBase no hits

PMRD ptc-miRf10051-akr: 9e-54

microPC no hits
UniProt no hits

RFAM no hits

Identical with: ptc-miRf10051-akr from PMRD (MNEST051873)

MORE

miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
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