ABOUT THIS RECORDspecies: Populus trichocarpa
source: PMRD, original name: ptc-miRf10603-akr
Taxonomy by NCBI:
Populus trichocarpa Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GGGTTGGGCGTGGACACGTC miRNA* CGTGTCCAGGTCCAACATGG mismatches: 2 bulges: 0 |
pre-miRNA
TGGACGTGTCCAGGTCCAACATGGGGTTAAGCGAGTTGGACATGGTCACATCTAAACCCGACCGCGTCCAAACAAAATGTGGGGTTGGGCGTGGACACGT
CCA
dot-bracket secondary structure
.(((((((((((.(((((((.(.(.(((.......((((((.(((((............))))).))))))....))).).).))))))).)))))))))
)).
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
TGGACGTGTCCAGGTCCAACATGGGGTTAAGCGAGTTGGACATGGTCACATCTAAACCCGACCGCGTCCAAACAAAATGTGGGGTTGGGCGTGGACACGT
CCA
dot-bracket secondary structure
.(((((((((((.(((((((.(.(.(((.......((((((.(((((............))))).))))))....))).).).))))))).)))))))))
)).
SIMILARITIES| miRBase no hits PMRD ptc-miRf10051-akr: 9e-54 microPC no hits | UniProt no hits RFAM no hits |
Identical with: ptc-miRf10051-akr from PMRD (MNEST051873) |
MOREmiRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
