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ABOUT THIS RECORD

ID: MNEST052426
species: Populus trichocarpa
source: PMRD, original name: ptc-miRf10604-akr

Taxonomy by NCBI:
Populus trichocarpa Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
GGGTTGGGCGTGGACGTGTCCAGGT

miRNA*
GTGGACGCGTCCAGGTCTAACGTGG

mismatches: 3
bulges: 0

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pre-miRNA
GTTGGGCGTGGACGCGTCCAGGTCTAACGTGGGGTTGGGCATTGTCGCGTTTAGACCTAATGTGGGGTTGGGCGTGGACGCGTCTAGGTACAACATGGGG
TTGGTCGGGGACGCGTCTAGACCCAACATGGGGTTGGGCGTGGACGTGTCCAGGTCCAAC


dot-bracket secondary structure
(((((((.((((((((((((.(((((((.(.(.(((((((.....(((((((((.(((......))))))))))))(((((((((..(..((((.....)
)))..)..)))))))))..).)))))).).).))))))).)))))))))))).)))))))



SIMILARITIES
miRBase no hits

PMRD ptc-miRf10605-akr: 9e-55

microPC no hits
UniProt no hits

RFAM no hits

Identical with: ptc-miRf10606-akr from PMRD (MNEST052428)

MORE

miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
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