ABOUT THIS RECORDspecies: Populus trichocarpa
source: PMRD, original name: ptc-miRf10609-akr
Taxonomy by NCBI:
Populus trichocarpa Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CCTGAACCCATCAGAGTTGGG miRNA* CAAGTTTAAGTGGGTTTGACTG mismatches: 4 bulges: 1 |
pre-miRNA
TTTACCCAAGTTTAAGTGGGTTTGACTGCATCACTAGGCTCAAGAGCTTTGAATATCAAACCCAAAAGCCTTGGGTCCAGCTGCAACCTGAACCCATCAG
AGTTGGGTGAG
dot-bracket secondary structure
.((((((((.(((..(((((((((..((((...((.((((((((.(((((..............))))))))))))).)).))))...))))))))).))
).)))))))).
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
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TTTACCCAAGTTTAAGTGGGTTTGACTGCATCACTAGGCTCAAGAGCTTTGAATATCAAACCCAAAAGCCTTGGGTCCAGCTGCAACCTGAACCCATCAG
AGTTGGGTGAG
dot-bracket secondary structure
.((((((((.(((..(((((((((..((((...((.((((((((.(((((..............))))))))))))).)).))))...))))))))).))
).)))))))).
SIMILARITIES| miRBase no hits PMRD ptc-miRf10330-akr: 0.000005 microPC no hits | UniProt no hits RFAM MIR474: 0.00002 |
MOREmiRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
