ABOUT THIS RECORDspecies: Populus trichocarpa
source: PMRD, original name: ptc-miRf10794-akr
Taxonomy by NCBI:
Populus trichocarpa Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GCCAGGTGGCACTCGGGTTTTCC miRNA* GAAGACCTAAGCGCCAGGTGGCAT mismatches: 5 bulges: 1 |
pre-miRNA
CCCTTTGCGAAGACCTAAGCGCCAGGTGGCATTGGGGTCTGTCCAGAGCATTGAATCAGCCACAGTGCCAGGTGGCACTCGGGTTTTCCTTAGCGG
dot-bracket secondary structure
((((..(.(((((((..((.((((..((((((((.((.(((..(((....)))...))))).))))))))..)))).))..))))))))..)).))
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
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CCCTTTGCGAAGACCTAAGCGCCAGGTGGCATTGGGGTCTGTCCAGAGCATTGAATCAGCCACAGTGCCAGGTGGCACTCGGGTTTTCCTTAGCGG
dot-bracket secondary structure
((((..(.(((((((..((.((((..((((((((.((.(((..(((....)))...))))).))))))))..)))).))..))))))))..)).))
SIMILARITIES| miRBase no hits PMRD ptc-miRf12360-akr: 0.00002 microPC no hits | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
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