ABOUT THIS RECORDspecies: Populus trichocarpa
source: PMRD, original name: ptc-miRf10806-akr
Taxonomy by NCBI:
Populus trichocarpa Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GTATTAAGCATGTCTCGATACC miRNA* TATCGAGACTTGCTTAATACTT mismatches: 3 bulges: 0 |
pre-miRNA
TGTTGGGATACATATCGAGACTTGCTTAATACTTGCCTTCATCATGGTTTTGGAAACATGGAGATTGGTAAGTTAGCAACATTGGTAAGTATTAAGCATG
TCTCGATACCAATCCCAACA
dot-bracket secondary structure
.((((((((...(((((((((.(((((((((((((((.((..((((..........))))..))...((......))......))))))))))))))).)
))))))))...)))))))).
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
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TGTTGGGATACATATCGAGACTTGCTTAATACTTGCCTTCATCATGGTTTTGGAAACATGGAGATTGGTAAGTTAGCAACATTGGTAAGTATTAAGCATG
TCTCGATACCAATCCCAACA
dot-bracket secondary structure
.((((((((...(((((((((.(((((((((((((((.((..((((..........))))..))...((......))......))))))))))))))).)
))))))))...)))))))).
SIMILARITIES| miRBase no hits PMRD ptc-miRf11699-akr: 8e-64 microPC no hits | UniProt no hits RFAM snoR71: 0.0000000000001 |
Identical with: ptc-miRf10393-akr from PMRD (MNEST052215) |
MOREmiRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
