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ABOUT THIS RECORD

ID: MNEST052630
species: Populus trichocarpa
source: PMRD, original name: ptc-miRf10808-akr

Taxonomy by NCBI:
Populus trichocarpa Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TGCCAATGGAAGCTTGCCCT

miRNA*
GGCAAATCTCCTTTGGCATG

mismatches: 4
bulges: 0

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pre-miRNA
ATTGCCGGGCAAATCTCCTTTGGCATGGCGCCGCACTCTACAGGAATGCATCAAGTGTTAGATATTGCGTGTCTTAGTGGCTGCATGCCAATGGAAGCTT
GCCCT
GTAAT


dot-bracket secondary structure
(((((.((((((.(.(((.((((((((..(((((..........(((((.....))))).(((((...)))))...)))))..)))))))).))).).))
)))).
)))))



SIMILARITIES
miRBase ptc-MIR399c: 6e-58

PMRD ptc-miRf10068-akr: 6e-58

microPC miR399: 0.00002
UniProt no hits

RFAM mir-399: 1e-56

Identical with: ptc-miR399b from PMRD (MNEST051748)

MORE

miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
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