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ABOUT THIS RECORD
ID:
MNEST052630
species:
Populus trichocarpa
source:
PMRD, original name:
ptc-miRf10808-akr
Taxonomy by NCBI:
Populus trichocarpa
Populus
Saliceae
Salicaceae
Malpighiales
fabids
rosids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TGCCAATGGAAGCTTGCCCT
miRNA*
GGCAAATCTCCTTTGGCATG
mismatches:
4
bulges:
0
View larger
pre-miRNA
ATTGCCG
GGCAAATCTCCTTTGGCATG
GCGCCGCACTCTACAGGAATGCATCAAGTGTTAGATATTGCGTGTCTTAGTGGCTGCA
TGCCAATGGAAGCTT
GCCCT
GTAAT
dot-bracket secondary structure
(((((.(
(((((.(.(((.((((((((
..(((((..........(((((.....))))).(((((...)))))...)))))..))
)))))).))).).))
)))).
)))))
SIMILARITIES
miRBase
ptc-MIR399c
:
6e-58
PMRD
ptc-miRf10068-akr
:
6e-58
microPC
miR399
:
0.00002
UniProt
no hits
RFAM
mir-399: 1e-56
Identical with:
ptc-miR399b
from PMRD (
MNEST051748
)
MORE
miRNEST target predictions
non-miRNEST targets
HuntMi prediction:
true miRNA
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