ABOUT THIS RECORDspecies: Populus trichocarpa
source: PMRD, original name: ptc-miRf10817-akr
Taxonomy by NCBI:
Populus trichocarpa Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTCACATCGGGAAAAAGGTCC miRNA* ACTTTTCTTTCCGGTGAGAGGC mismatches: 1 bulges: 1 |
pre-miRNA
GGCTGTGGGACTTTTCTTTCCGGTGAGAGGCTGGTGGAGAGGATATGCATGCCCGTGCCGGATTTTGGCCATTTCACATCGGGAAAAAGGTCCTTTGCC
dot-bracket secondary structure
(((...(((((((((.(((((((((.((((.((((.((((......((((....))))....)))).)))))))).))))))))))))))))))..)))
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
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GGCTGTGGGACTTTTCTTTCCGGTGAGAGGCTGGTGGAGAGGATATGCATGCCCGTGCCGGATTTTGGCCATTTCACATCGGGAAAAAGGTCCTTTGCC
dot-bracket secondary structure
(((...(((((((((.(((((((((.((((.((((.((((......((((....))))....)))).)))))))).))))))))))))))))))..)))
SIMILARITIES| miRBase no hits PMRD ptc-miRf10705-akr: 2e-51 microPC no hits | UniProt no hits RFAM no hits |
Identical with: ptc-miRf10705-akr from PMRD (MNEST052527) |
MOREmiRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
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