ABOUT THIS RECORDspecies: Populus trichocarpa
source: PMRD, original name: ptc-miRf10829-akr
Taxonomy by NCBI:
Populus trichocarpa Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CCAGACCCAATAGTCTTGGA miRNA* CAAGAATCTTGGGTTTGGCT mismatches: 4 bulges: 0 |
pre-miRNA
TATACCCAAGAATCTTGGGTTTGGCTGCAACGCCTGACCTAAGAGTGATATTTATAATATTAATAATAATATTAAACTTGCATGACCCAAGTTTAAATGG
GTCTAGCTGCAATACCAGACCCAATAGTCTTGGATGTG
dot-bracket secondary structure
((((.((((((...((((((((((.((((..((..((((((....((((((.....)))))).........(((((((((.......))))))))).)))
)))..))))))...))))))))))...)))))).))))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
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TATACCCAAGAATCTTGGGTTTGGCTGCAACGCCTGACCTAAGAGTGATATTTATAATATTAATAATAATATTAAACTTGCATGACCCAAGTTTAAATGG
GTCTAGCTGCAATACCAGACCCAATAGTCTTGGATGTG
dot-bracket secondary structure
((((.((((((...((((((((((.((((..((..((((((....((((((.....)))))).........(((((((((.......))))))))).)))
)))..))))))...))))))))))...)))))).))))
SIMILARITIES| miRBase no hits PMRD ptc-miRf12497-akr: 2e-74 microPC no hits | UniProt no hits RFAM MIR474: 0.0000005 |
Identical with: ptc-miRf12497-akr from PMRD (MNEST054319) |
MOREmiRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
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