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ABOUT THIS RECORD
ID:
MNEST052658
species:
Populus trichocarpa
source:
PMRD, original name:
ptc-miRf10836-akr
Taxonomy by NCBI:
Populus trichocarpa
Populus
Saliceae
Salicaceae
Malpighiales
fabids
rosids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
GGGCTGTTTGCGCTGTCGAATGCAT
miRNA*
GCGTCACCAGGGGAAGCAGTTTCGT
mismatches:
4
bulges:
2
View larger
pre-miRNA
GAATGCAT
GCGTCACCAGGGGAAGCAGTTTCGT
TGAAGGTTTCTGAGGCCGCAC
GGGCTGTTTGCGCTGTCGAATGCAT
GCGTC
dot-bracket secondary structure
..((((((
(((((..(((.(.((((((((.(((
....((((.....))))..))
))))))))).).)))..).))))))
)))).
SIMILARITIES
miRBase
no hits
PMRD
ptc-miRf10752-akr
:
5e-30
microPC
no hits
UniProt
no hits
RFAM
no hits
MORE
miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction:
true miRNA
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