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ABOUT THIS RECORD

ID: MNEST052815
species: Populus trichocarpa
source: PMRD, original name: ptc-miRf10993-akr

Taxonomy by NCBI:
Populus trichocarpa Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
CTGCAGCGAATTAGTGTTCGCTGC

miRNA*
AGCGAATTAGCATTCGCTGTCGAA

mismatches: 5
bulges: 0

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pre-miRNA
TACATTGTCTGCAGCGAATTAGTGTTCGCTGCTGAAGTTCTGTTGTCTGCAGCGAATCAGCTTTCGCTGCCGAAATTGAGTTGTCTGTAGCGAATTAGCA
TTCGCTGTCGAA
AGTGTG


dot-bracket secondary structure
((((((.((.(((((((((....(((((((((.((..(((.(((.((.((((((((......)))))))).))))).)))...)).)))))))))....)
)))))))).)).
))))))



SIMILARITIES
miRBase no hits

PMRD ptc-miRf11788-akr: 1e-62

microPC no hits
UniProt no hits

RFAM no hits

Identical with: ptc-miRf11788-akr from PMRD (MNEST053610)

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
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