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ABOUT THIS RECORD

ID: MNEST053033
species: Populus trichocarpa
source: PMRD, original name: ptc-miRf11211-akr

Taxonomy by NCBI:
Populus trichocarpa Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TCTTGGGCTTGGAGTTGCAG

miRNA*
GCAACAACAAACCCAAGAGC

mismatches: 3
bulges: 0

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pre-miRNA
ATCCAAGGCTCTTGGGCTTGGAGTTGCAGCCAGACTAAAGAGCGTTGAGTGTGGTTGAAACGTCAGGCCCAAGAACCTTGGGTTTGGCTGCAACAACAAA
CCCAAGAGC
GTTGGGT


dot-bracket secondary structure
((((((.(((((((((.(((..((((((((((((((...(((.(((...((.((((((....))).)))))..)))))).))))))))))))))..))).
)))))))))
.))))))



SIMILARITIES
miRBase no hits

PMRD ptc-miRf10583-akr: 4e-59

microPC no hits
UniProt no hits

RFAM MIR474: 3e-51

Identical with: ptc-miRf10583-akr from PMRD (MNEST052405)

MORE

miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
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