ABOUT THIS RECORDspecies: Populus trichocarpa
source: PMRD, original name: ptc-miRf11394-akr
Taxonomy by NCBI:
Populus trichocarpa Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA AACCTACTCTCTTGGGTCTG miRNA* GATCCAGGGGAGCGGGTGTG mismatches: 3 bulges: 0 |
pre-miRNA
GGTCTGCAAACCTACTCTCTTGGGTCTGCAGCCAACGCCTGGGGTTTGCAACCTTACCATGCCCCACCAAACAAATTTGTTATTCTTTGTTGCGAGGTCT
GCAGATCCAGGGGAGCGGGTGTGCAACC
dot-bracket secondary structure
(((.((((.(((..(((((((((((((((((((..(((.((((((.((.........)).))))))...((((((..........))))))))).)).))
)))))))))))))))..))).)))))))
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
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GGTCTGCAAACCTACTCTCTTGGGTCTGCAGCCAACGCCTGGGGTTTGCAACCTTACCATGCCCCACCAAACAAATTTGTTATTCTTTGTTGCGAGGTCT
GCAGATCCAGGGGAGCGGGTGTGCAACC
dot-bracket secondary structure
(((.((((.(((..(((((((((((((((((((..(((.((((((.((.........)).))))))...((((((..........))))))))).)).))
)))))))))))))))..))).)))))))
SIMILARITIES| miRBase no hits PMRD ptc-miRf10938-akr: 1e-68 microPC no hits | UniProt no hits RFAM no hits |
Identical with: ptc-miRf10938-akr from PMRD (MNEST052760) |
MOREmiRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
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