ABOUT THIS RECORDspecies: Populus trichocarpa
source: PMRD, original name: ptc-miRf11396-akr
Taxonomy by NCBI:
Populus trichocarpa Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CAAGGCTCTGATACCATGTCAA miRNA* GACATGATATCAGAGCCTTGAT mismatches: 1 bulges: 0 |
pre-miRNA
CTTGGTCATCAAGGCTCTGATACCATGTCAAAGAATCATATTTTGAGACCTTATCTAACAGCTTAAGCTATTGGGTTGAGATGGTTCCTTGACATGATAT
CAGAGCCTTGATGACGAAG
dot-bracket secondary structure
(((.((((((((((((((((((.((((((((.(((((((......(((.....)))..((((((((....))))))))..))))))).)))))))).)))
))))))))))))))).)))
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
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CTTGGTCATCAAGGCTCTGATACCATGTCAAAGAATCATATTTTGAGACCTTATCTAACAGCTTAAGCTATTGGGTTGAGATGGTTCCTTGACATGATAT
CAGAGCCTTGATGACGAAG
dot-bracket secondary structure
(((.((((((((((((((((((.((((((((.(((((((......(((.....)))..((((((((....))))))))..))))))).)))))))).)))
))))))))))))))).)))
SIMILARITIES| miRBase ptc-MIR481b: 7e-24 PMRD ptc-miRf12220-akr: 3e-63 microPC no hits | UniProt no hits RFAM no hits |
Identical with: ptc-miRf12220-akr from PMRD (MNEST054042) |
MOREmiRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
