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ABOUT THIS RECORD

ID: MNEST053221
species: Populus trichocarpa
source: PMRD, original name: ptc-miRf11399-akr

Taxonomy by NCBI:
Populus trichocarpa Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
ATTCCGTCGGTATATACCGAC

miRNA*
CGGTATATATTACCGACGGAATAA

mismatches: 0
bulges: 3

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pre-miRNA
CGACGGATTTATTCCGTCGGTATATACCGACAGATTTTGAGACGGAATTATTTTCGTCGGTATATATTACCGACGGAATAATTCCGTCG

dot-bracket secondary structure
(((((((.(((((((((((((((((((((((.((...(((.......)))...)))))))))))...)))))))))))))).)))))))


SIMILARITIES
miRBase no hits

PMRD ptc-miRf11398-akr: 2e-45

microPC no hits
UniProt no hits

RFAM no hits

Identical with: ptc-miRf11398-akr from PMRD (MNEST053220)

MORE

miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
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