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ABOUT THIS RECORD
ID:
MNEST054662
species:
Solanum tuberosum
miRNA family:
MIR157
source:
PMRD, original name:
stu-miR157b
Taxonomy by NCBI:
Solanum tuberosum
Solanum
Solaneae
Solanoideae
Solanaceae
Solanales
lamiids
asterids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TTGACAGAAGAGAGAGAGCAC
miRNA*
mismatches:
4
bulges:
426
View larger
pre-miRNA
GTCATTCATAGGTGGAACCTGTGCAGTTATGTTCAAAAGTTGAAGAATCAAGAAATTACAATTCTTGGGAATTCATGGCACTGGCAAACAAAAATTTACT
GCATAATTCATAATATTAGACTTTCTTAATAGTTTAAAAGCCCAACCTATATATTATATACCAGTACTAAACAGACCTTCTGCTTCATCCAAGTTTTGAC
ATGTCAAAAGGGCAAAATGGGAAGGTCGCCAAATCCTGAAAATACACCAACACATCAGATGTTGGCTTCAGTTCAATGCATTGAGATAAAAGTCTGTGTC
GAATGGAGCTTTGAACACTCCCATTTCCTGAAAGCTACCGCCACTGTTACTATTAGCAGCCAATGTATGGTAATGAGTATCGGATGAATGTTGTCCAGCC
TGCTGCCAGTATTGACTGGACATATGCGGCACACCCTGTGGAATTGCCTGCATCATCTGCTCGGGCATGCTGGTTTGATTTGCATGGTTGAGTGAAACAG
TCTCAGGCTCGGATGAACCCCAGGAATTAG
TTGACAGAAGAGAGAGAGCAC
GAGGAAATTCCGGTCCTGTAGCCATATTGAACATGGATTCCTTGGCACC
TCGATTAAAAACCTCGG
dot-bracket secondary structure
.......((((((((....((((((((..((((....(((((((...(((((((.......)))))))...))))....)))....)))).......)))
)))))..........(((((((........)))))))....)).))))))..........((..............((((((..(((.((...((((((.
...)))))).))...(((((((.....(((((...((((...............))))...)))))....((((((.((.((((.(((......))).))
)).....)).))))))..)))))))(((((.......(((..(((((((((((..(((.....))))))))))).)))..))).......(..(((((((
((((((((((....)))))....((((((((..((....))...)))).))))..((.((((((.(((((...........))))).))))))))..)))
...)))))).)))..)....))))).....
.))))))))).(((.(.((.(
((((((..((((.((..(((....))).))...))))))))))))).))
)).............))
SIMILARITIES
miRBase
far-MIR156b
:
0.00003
PMRD
stu-miR156c
:
3e-42
microPC
miR157
:
0.0005
UniProt
no hits
RFAM
no hits
Identical with:
stu-miR156c
from PMRD (
MNEST054658
)
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
not a miRNA
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