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ABOUT THIS RECORD
ID:
MNEST054667
species:
Solanum tuberosum
miRNA family:
MIR171
source:
PMRD, original name:
stu-miR171
Taxonomy by NCBI:
Solanum tuberosum
Solanum
Solaneae
Solanoideae
Solanaceae
Solanales
lamiids
asterids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TGATTGAGCCGCGCCAATATC
miRNA*
TGACGAGGCACCATCA
mismatches:
5
bulges:
3
View larger
pre-miRNA
TGATTGAGCCGCGCCAATATC
ATTTGCGCGTTTGAGAATTGTCCAGCCAGCAATAGTTCAGAGGCCTGAAAAATCTGGTCATAAATAAACTGTTGTTCCT
GCAATTGA
TGACGAGGCACCATCA
dot-bracket secondary structure
.(((.(.(((.((....((((
(.((((..(((.((......)).))).((((((((((....((((.((....)).)))).......))))))))))...
)))).)))
)).)).))).).))).
SIMILARITIES
miRBase
sbi-MIR171j
:
0.00002
PMRD
stu-miR170
:
3e-66
microPC
miR171
:
0.0001
UniProt
no hits
RFAM
MIR171_1: 0.0004
Identical with:
stu-miR170
from PMRD (
MNEST054666
)
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction:
not a miRNA
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